PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019004-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 71aa MW: 7947.37 Da PI: 10.2177

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019004-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.5	1.2e-11	5	33	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +++WT+eE+e l+ +v+++G+g Wk I + WALNUT_00019004-RA 5 KQKWTAEEEEALLAGVAKHGPGKWKNILK 33 79*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.772	1	41	IPR017930	Myb domain
SuperFamily	SSF46689	3.88E-12	2	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-12	4	46	IPR009057	Homeodomain-like
Pfam	PF00249	6.6E-9	5	33	IPR001005	SANT/Myb domain
CDD	cd11660	5.35E-14	6	47	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPHFAPF LTHRSNIGLK VLLLLLFYLL 60 PLFTPSSAHL A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007024539.1	2e-28	Homeodomain-like/winged-helix DNA-binding family protein, putative
Refseq	XP_012442322.1	2e-28	PREDICTED: telomere repeat-binding factor 4
Swissprot	F4IEY4	1e-23	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A061GC92	2e-28	A0A061GC92_THECC; Homeodomain-like/winged-helix DNA-binding family protein, putative
TrEMBL	A0A0B0MK00	2e-28	A0A0B0MK00_G
TrEMBL	A0A0D2QFU5	2e-28	A0A0D2QFU5_G
STRING	GLYMA08G20270.1	6e-24	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3228	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	3e-16	MYB_related family protein