PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019004-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 71aa    MW: 7947.37 Da    PI: 10.2177
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019004-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.2e-11533129
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                        +++WT+eE+e l+ +v+++G+g Wk I +
  WALNUT_00019004-RA  5 KQKWTAEEEEALLAGVAKHGPGKWKNILK 33
                        79*************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.772141IPR017930Myb domain
SuperFamilySSF466893.88E-12250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-12446IPR009057Homeodomain-like
PfamPF002496.6E-9533IPR001005SANT/Myb domain
CDDcd116605.35E-14647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPHFAPF LTHRSNIGLK VLLLLLFYLL  60
PLFTPSSAHL A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024539.12e-28Homeodomain-like/winged-helix DNA-binding family protein, putative
RefseqXP_012442322.12e-28PREDICTED: telomere repeat-binding factor 4
SwissprotF4IEY41e-23TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A061GC922e-28A0A061GC92_THECC; Homeodomain-like/winged-helix DNA-binding family protein, putative
TrEMBLA0A0B0MK002e-28A0A0B0MK00_G
TrEMBLA0A0D2QFU52e-28A0A0D2QFU5_G
STRINGGLYMA08G20270.16e-24(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-16MYB_related family protein